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> cellBasisVector1, but one that can also be factorized in 2's, 3's (can be a bit bigger or smaller) to the number on > For PMEGridSizeX, one should use a number as close as possible Something like this is what I had in mind: Is would benefit from a more detailed text and also from > 2) Explaining what PMEGridSizeX ( or PMEGridSizeY or PMEGridSizeZ) The tutorial to explain this to the user. A lengthy info box has now been included in The file namd-tutorial-files/common/nf is a template for > would save new users a lot of time if you could provide a Since restart analysesĬonfiguration files are very different from the initial files, it > water sphere examples, of restart analyses. > 1) It would be very useful if you could provide a modelĬonfiguration file, for example taking the ubiquitin in a water box Mac version still uses xmgrace for plotting data, and the Windows Of simulations, so all analysis can be done inside of VMD. The new tutorial uses tcl scripting to perform analysis

New tutorial is also available in a Windows version as well as a Unix/ Version of the NAMD tutorial, which should be available soon.

Maybe in reply to: Ana Celia Araujo Vila Verde: "suggestions for improving NAMD tutorial".Previous message: Jake Michaelson: "QM/MM tutorial".Next message: Timothy Isgro: "Re: qm/mm in namd?".